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Friday, December 12, 2008

Biochemical Protocol.11. Cellular Organelle

MT/Organelle Motility Assay*
Membrane Mixes: Variations on a Theme*
Preparation of Rat Liver Cell Cytosol and/or Organelle Fractions*
Preparation of Sea Urchin Sperm Axonemes*
Preparation of Porcine Brain Tubulin*

Biochemical Protocol.12. Immunology

Antibody cleanup Yale Genome Analysis Center, Yale University

Bioengineering and Immunology (Video Protocol)

Computer immunology

Conjugation of monoclonal antibodies (complete) Dr. M Roederer, NIH, Vaccine Research Center

Direct Immunofluorescence Staining of Mononuclear Cells BD Biosciences

Direct Immunofluorescence Staining of Whole Blood Using Ammonium Chloride Lysing Solution BD Biosciences

Iindirect immunoflourescence for yeast I Dr. DE Koshland, Carnegie Institution of Washington

Immunofluorescence Protocols and Solutions

Immunofluorescence staining of cell suspensions of murine lymphoid tissue EBioscience.com

Immunofluorescence staining of human peripheral blood EBioscience.com

Immunofluorescence Technique Dr. DL Spector, Cold Spring Harbor Laboratory

Immunofluorescent Staining of Mouse and Rat Leucocytes BD Biosciences

Immunohistochemistry on Cryosections

Immunology Field Trip--Protocol

In Situ Probe

Indirect Immunofluorescence Staining of Mononuclear Cells BD Biosciences

Isolation of Resting B Cells From Mouse Spleen

MACS Depletion Drs. L Herzenberg, Stanford University

Making FITC and Biotin conjugates Therapeutic Immunology Group, Oxford University

Preparing cells for immunofluorescence Yale Genome Analysis Center, Yale University

Biochemical Protocol.13. Flow Cytometry Protocols (1)

7-AAD Staining of Dead Cells

A flow cytometric protocol for detection of Cryptosporidium spp.

Blocking FC-Receptor Binding

Calibrating Becton Dickinson Flow Cytometers for RFI Measurements

CD38 Fluorescence Intensity Quantitation

Detection of Apoptosis by 7-AAD Staining

DNA Staining for Cell Cycle Analysis

FCM: DNA Analysis by Flow Cytometry

FCM: FASC Analysis of Cell Cycle using BrdU and PI

FCM: Immunofluorescent Staining of Rat Thymocytes

FCM: Sodium and Potassium Analysis by Flow Cytometry

Flow Cytometry Glossary

Flow cytometry of murine blood

Flow Cytometry Principles UC Berkeley

Flow Cytometry Protocol

Flow Cytometry Protocol for Intracellular Staining Using Conjugated Second Antibody.

Flow Cytometry Protocol for Staining of Colonocytes - Surface Antigens

Flow Cytometry: Calcium Flux Analysis

Flow Cytometry: Membrane Potential Analysis by Flow Cytometry

Flow CytometryAnnexin V Protocol

Flow CytometryCaspaTag Caspase Activity Protocol

Flow CytometryPARP PE

GENERAL CELL STAINING PROTOCOL FOR FLOW CYTOMETRY 1)

Biochemical Protocol.13. Flow Cytometry Protocols (2)

Immunofluorescent Staining for Flow Cytometry.

Indirect flow cytometry (FACS) protocol | Abcam

Intracellular Antigen Staining

Lineage analysis of blood
MEF nuclei prep for DNA content
Flow of surface and nuclear markers
BrdU and PI Staining Cells for Flow
Simultaneous BrdU and surface staining
Flow sorting fibroblasts for GFP
Setup and Use of the Cytometer
96-well Flow Setup Record (PDF)
Counting Fluorescently Stained Cells

Measurement of GFP Expression and DNA Content in Permeabilized Cells

Measurement of Green Fluorescent Protein Expression and DNA Content in Unfixed Cells

Measurement of Intracellular CA2+ and Cell Surface Antigen Expression -- NEW!

Method for EtOH fixation of cells for long-term storage and DNA staining

Minimizing Background Staining

Monoclonal Antibody Staining Procedure

Preparation of 2% Formaldehyde Solution

Propidium Iodide Staining of Dead Cells

Protocol: Flow Cytometry (Millipore)

Protocols (BD Bioscience)

Questions and Answers about Cell Sorting

Simultaneous Measurement of Apoptosis and Necrosis

Simultaneous Measurement of Cell Surface Immunofluorescence, Viability, and DNA content

Simultaneous Measurement of Dual-Color Immunofluorescence and DNA/RNA Content

Simultaneous Measurement of Three-Color Immunofluorescence and DNA Content

Staining Procedure for Whole Blood

Standard Flow Cytometry Protocol

Surface Antigen Staining and DNA Content

Surface Staining for Cell Sorting

Biochemical Protocol.14. BIOCHEMISTRY

Cell Wall prep from Arabidopsis

GC analysis of alditol acetates

Golgi-Vesicles preparation from pea etiolated hypocotyls

High Voltage Paper Electrophoresis

Lipid extraction

Thin Layer Chromatography

Transport of UDP-[3H]-Glc to Golgi-Vesicles

UDP-sugar binding assay

Biochemical Protocol.15. BACTERIA

Electro Competent Agrobacterium Cells

Electroporation

Introduction of plasmid into Agrobacterium (method II)

Introduction of plasmid into Agrobacterium (method III)
General Cloning Procedures
Colony Hybridization
Electroporation & Blue/White Selection
Large scale plasmid prep, PEG method
Large scale plasmid prep, Qiagen/CsCl
Ligation Optimization
Plasmid Miniprep

Preparation of competent E. coli cells using CaCl2

Transformation of bacteria
Release of recombinant proteins from bacterial cells using Novagen's Bugbuster

Purification of recombinant hexahistidine-tagged proteins

Purification of recombinant GST-tagged proteins

Biochemical Protocol.16. Arabidopsis Protocols

Arabidopsis cell suspension and root liquid culture

Arabidopsis EMS mutagenesis of seeds

Arabidopsis genomic DNA prep-CTAB extraction method

Arabidopsis genomic DNA prep-Proteinase K method

Arabidopsis GUS staining

Arabidopsis liquid culture

Arabidopsis mutants

Arabidopsis quick genomic DNA prep for PCR

Arabidopsis root culture

Arabidopsis seed sterilization

Arabidopsis vacuum infiltration (plant transformation)

Confocal Microscopy- Nuclear Staining

Cross-fertilization of Arabidopsis

Crossing Arabidopsis plants (flower emmansculation and flower preparation for fertilization)

Glucocorticoid (GVG)-inducible promoter system for Arabidopsis

How we grow Arabidopsis

In situ hybridization using radioactive probes

Non radioactive in situ hybridization

Plastic Sectioning- Tissue fixation

Protoplast preparation (plant tissue)

Scanning Electron Microscope- Tissue fixation and dissection

Transmission Electron Microscopy- Tissue fixation

Vacuum infiltration of Arabidopsis plants