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Wednesday, June 11, 2008

Useful tools and softwares for biochemistry

A comprehensive database of molecular structures
http://www.biomednet.com/db/msd

A biocomputing hypertext coursebook
http://merlin.mbcr.bcm.tmc.edu:8001/bcd/Curric/welcome.html

A molecular graphics art show
http://www.scripps.edu/pub/goodsell/mgs_art/mgs_art.html

A more recent molecular graphics art show
http://www.scripps.edu/pub/goodsell/mgs_art/mgs_art2/index.html

The Protein Data Bank through Microsoft Windows
http://www.sdsc.edu/pb/wpdb/wpdb.htm

Software for biological data representation
http://www.sdsc.edu/pb/Software.html

Home page for a molecular graphics laboratory
http://www.scripps.edu/pub/olson-web/

Hierarchical classification of proteins
http://www.protomap.cs.huji.ac.il/

Biocomputing and molecular modeling
http://www-bio.unizh.ch/

Computational molecular biology at NIH
http://webasaurus.dcrt.nih.gov/molbio/

Online resources for molecular biology
http://webasaurus.dcrt.nih.gov/molbio/servers.html

A collection of biomolecular research tools
http://www.public.iastate.edu/~pedro/research_tools.html

Molecular models for biochemistry
http://info.bio.cmu.edu/Courses/BiochemMols/BCMolecules.html

Image library of biological macromolecules
http://www.imb-jena.de/IMAGE.html

The "Ribbons" software home page
http://www.cmc.uab.edu/ribbons/

PovChem program for molecular graphics
http://grserv.med.jhmi.edu/~paul/Manual.html

The MolMol program for molecular visualization
http://www.mol.biol.ethz.ch/wuthrich/software/molmol/

Molecular biology database compendium
http://www.tulane.edu/~dmsander/biotechniquessites.html

Some biochemistry molecular models
http://moby.ucdavis.edu/HRM/Biochemistry/molecules.htm

A molecular library
http://c4.cabrillo.cc.ca.us/projects/library/

Animated and still biochemistry graphics
http://www-medlib.med.utah.edu/NetBiochem/graphlis.htm

Online macromolecular museum
http://www.clunet.edu/BioDev/omm/gallery.htm

An art gallery of molecular models
http://www2.kenyon.edu/depts/biology/eward/gallery/galleryintro.html

Entrez: Data sets for biochemistry and molecular biology.
http://www3.ncbi.nlm.nih.gov/Entrez/index.html

MolGraph: Molecular modeling program.
http://chemb16.leidenuniv.nl/~armand/

Swiss PDB viewer
http://expasy.expasy.ch/spdbv/

NIH Center for Molecular Modeling
http://cmm.info.nih.gov/modeling/

Virtual reality and biochemistry
http://www.tc.cornell.edu:80/~richard/

Biomolecular Visualization Center
http://amanda.uams.edu/index_text.html

VRML file creator for chemical structures
http://www2.ccc.uni-erlangen.de/services/vrmlcreator/

Rendering techniques for molecular models
http://scsg9.unige.ch/fln/eng/toc.html

The Journal of Molecular Modeling
http://link.springer.de/link/service/journals/00894/index.htm

Using NMR for biomolecular structures
http://www.ocms.ox.ac.uk/idc/structures/

Biomolecular structure and modeling in the United Kingdom
http://www.biochem.ucl.ac.uk/bsm/

Molecular Models Online
http://www.webmolecules.com/index.shtml

Molecular visualization tools and sites
http://www.indiana.edu:80/~cheminfo/mvts.html

RCSB: The home site for all PDB files.
http://www.rcsb.org/pdb/

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