Web Sourece: Enzymology

Advanced Biochemistry and Enzymology Lecture Notes (BCMB 8010)

http://bmbiris.bmb.uga.edu/wampler/8010/lectures/

Enzyme handbook
http://www.springer-ny.com/catalog/np/jan96np/DATA/3-540-60295-X.html

Enzyme labs using Jello
http://www.woodrow.org/teachers/bi/1991/enzymes.html

Enzyme specificity
http://tidepool.st.usm.edu/crswr/enzspecificity.html

Enzyme Specificity and Regulation

http://www.bmb.psu.edu/courses/bmb401_spring2003/regulation.pdf

Enzymology

http://porpax.bio.miami.edu/~cmallery/255/255enz/enzymology.htm

HIV and key enzymes
http://www.sdsc.edu/GatherScatter/GSsummer96/larsen.html

How enzymes work
http://www.wsu.edu/~hurlbert/pages/Chap7.html

Introduction to enzyme kinetics

http://www.curvefit.com/introduction63.htm

Lysozyme
http://www.bio.cmu.edu/Courses/BiochemMols/BuildBlocks/lysozyme.html

Mechanisms of Enzyme Action

http://www.uvm.edu/~mcase/courses/chem205/lecture16.pdf

Mechanism of Enzyme Action

http://www.elmhurst.edu/~chm/vchembook/571lockkey.html

Methods of Enzymology

http://www.sciencedirect.com/science/bookseries/00766879

Enzymology Kinetics
（Source：INTERNATIONAL UNION OF BIOCHEMISTRY AND MOLECULAR BIOLOGY）

CONTENTS

1. Introduction

2. Basic definitions

2.1 Rates of consumption and information

2.2 Rate of reaction

2.3 Elementary and composite reactions

3. Order of reaction and rate constant

3.1 Numbering of reactions

3.2 Steady-state hypothesis

4. Enzyme reactions involving a single substrate

4.1 Limiting kinetics of enzyme-catalysed reactions

4.2 Michaelis-Menten kinetics

4.3 Non-Michaelis-Menten kinetics

5. Enzyme reactions involving more than one substrate

5.1 Michaelis-Menten kinetics

5.2 Michaelis-Menten kinetics of a two-substrate reaction

6. Inhibition

6.1 Reversible and irreversible inhibition

6.2 Linear and non-linear inhibition

6.3 Degree of inhibition

6.4 Classification of inhibition types

6.5 Product inhibition

7. Activation

8. pH effects

9. Pre-steady-state kinetics

10. Non-Michaelis-Menten kinetics

11. Types of mechanism for enzymic catalysis

12. Enzyme activity

13. Summary of recommended symbols

References

Addendum 1. Rate of conversion

Addendum 2. Rate of conversion Symbol

Web Source: Oxidative phosphorylation

Oxidative phosphorylation overview
http://www.bmb.leeds.ac.uk/illingworth/oxphos/Index.htm

Enzymes and pathway of oxidative phosphorylation
http://www.gwu.edu/~mpb/oxidativephos.htm

Oxidative Phosphorylation

http://www.gwu.edu/~mpb/oxidativephos.htm

Oxidative Phosphorylation (Flash)

http://www.chem.purdue.edu/courses/chm333/oxidative_phosphorylation.swf

Oxidative Phosphorylation (Interactive Animation)

http://www.wiley.com/legacy/college/boyer/0470003790/animations/electron_transport/electron_transport.htm

Oxidative Phosphorylation: Chemiosmotic Coupling

http://www.rpi.edu/dept/bcbp/molbiochem/MBWeb/mb1/part2/oxphos.htm

Energy for the Body: Oxidative Phosphorylation

http://www.chemistry.wustl.edu/~edudev/LabTutorials/Cytochromes/cytochromes.html

Oxidative Phosphorylation

http://www.bmb.leeds.ac.uk/illingworth/oxphos/

Oxidative Phosphorylation

http://science.nhmccd.edu/biol/etc/respirat.html

Oxidative Phosphorylation

http://www.steve.gb.com/science/oxidative_phosphorylation.html

Oxidative phosphorylation - Reference pathway

http://www.genome.ad.jp/kegg/pathway/map/map00190.html

Animation of Chemiosmotic ATP synthesis in Bacteria

http://www.microbelibrary.org/images/Tterry/anim/ATPsynthbact.html

Web Source: Biochemical Tutorials, Quizzes, and Notes

An introduction to X-Ray Crystallography
http://www-structure.llnl.gov/Xray/101index.html

Access Excellence: An extensive resource site for bioscience teachers and students.
http://www.accessexcellence.org/index.html

Advanced Biochemistry and Enzymology Lecture Notes

http://bmbiris.bmb.uga.edu/wampler/8010/lectures/

Biomolecular Structures

http://www.bcbp.gu.se/~orjan/bmstruct/

Biology Links: Internet resources in biology from the U.S. Geological Survey.
http://info.er.usgs.gov/network/science/biology/index.html

BioChemNet: A large resource collection for biology and chemistry education.
http://schmidel.com/bionet/biotech.htm

Biocomputing: Networking and using the Internet in an organized fashion for molecular biology.
http://merlin.mbcr.bcm.tmc.edu:8001/bcdusa/Curric/Netwkg2/ch2.html

Biochemistry Quiz

http://library.thinkquest.org/C006669/data/Biol/biochemquiz.html

Biochemical Videos

http://www.e-biotek.com/protocols/ebiotek_200.htm

Biology Hypertextbook: A Web approach to cell and molecular biology from MIT.
http://esg-www.mit.edu:8001/esgbio/7001main.html

Biochemistry Superbook

http://www.lab-manual.com/lm_309.htm

Biochemistry Quiz

http://www.biologymad.com/resources/AS%20Biochemistry%20Quiz.pdf

Biotechnology Applied Biochemistry

http://www.babonline.org/bab/default.htm

Biochemistry Online

http://employees.csbsju.edu/hjakubowski/classes/ch331/bcintro/default.html

Biochemistry Lecture Notes & Labs

http://chemistry.about.com/od/lecturenoteslab1/Biochemistry_Lecture_Notes_Labs.htm

BIOCHEMISTRY 303

http://www.tamu.edu/classes/bich/mullins/bich303/Lectures.html

Biochemistry 22.202 Tutorials

http://www.massey.ac.nz/~wwbioch/Prot/tutehome/tutepage.htm

Biology I Animations Movies & Interactive Tutorial Links

http://science.nhmccd.edu/biol/bio1int.htm

Concepts in Biochemistry: Quizzes

http://www.wiley.com/legacy/college/boyer/0470003790/quiz/quizzes.htm

CueCard Quiz

http://www.execulink.com/~ekimmel/cuecard.htm

CHM 3300 Survey of Biochemistry

http://www.ux1.eiu.edu/~cfsmt/Courses/3300/LectureNotes.html

Discovery Channel Online
http://www.discovery.com/online.html

Free eBooks in Life Science

http://www.e-biotek.com/protocols/ebiotek_194.htm

General Resources and Tutorials

http://www.biochemweb.org/general.shtml

Molecular Biology Quiz: Sequence structure and molecular biology databases.
http://www.medkem.gu.se/edu/

Molecular Biology Protocols: From the Northwest Fisheries Sciences Center.
http://research.nwfsc.noaa.gov/protocols.html

Molecular Biology Swiss-Quiz: An interactive site for answering questions from a database.
http://www.expasy.ch/swiss-quiz/

Multi-talented Database Searcher
searchlight.cdlib.org/cgi-bin/searchlight

Molecular biology links from Harvard University
http://mcb.harvard.edu/BioLinks.html

On-Line Biology Book: A full-featured text in general biology.
http://gened.emc.maricopa.edu/bio/bio181/BIOBK/BioBookTOC.html

Organic Chemistry Tutorial Webs

http://www.gwu.edu/~mpb/organic.htm

Resources of Medical Biochemistry

http://www.lab-manual.com/lm_191.htm

Science Comes Alive Series: Images of biomolecules from the San Diego Supercomputer Center
http://www.sdsc.edu/ScienceAlive/sciencealive.html

The Biology Project
http://www.biology.arizona.edu/default.html

The Journal of Biochemistry (Oxford)

http://jb.oxfordjournals.org/

World Lecture Hall: A collection of biochemistry resources from a number of U.S. universities.
http://www.utexas.edu/world/lecture/bch/

Web Biochemistry: Tutorials

http://wbiomed.curtin.edu.au/teach/biochem/tutorials/tutorials.html

Yahoo Science: Links, animations, databases, and more.
http://dir.yahoo.com/Science/Chemistry/Biochemistry/

Web Source: Biological Functions and Structures

An Introduction to the Gene Ontology

http://www.geneontology.org/GO.doc.shtml

Biological function and the genetic code are interdependent

http://www.idnet.com.au/files/pdf/Life%20is%20not%20natural.pdf

Protein similarities
http://www.sdsc.edu/GatherScatter/GSsummer96/bourne.html

Proteomics Server of the Swiss Institute of Bioinformatics
http://expasy.hcuge.ch/

Protomap: Classifications of protein sequences
http://www.protomap.cs.huji.ac.il/

Structure of ascorbic acid and its biological function

http://www3.interscience.wiley.com/journal/120761326/abstract?CRETRY=1&SRETRY=0

Strategies for protein sequencing
http://esg-www.mit.edu:8001/esgbio/lm/proteins/sequencing/strategies.html

The RecA Protein: Structure and Biological Function

http://www.callutheran.edu/Academic_Programs/Departments/BioDev/omm/reca/recamast.htm

Unraveling prion structures and biological functions

http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1414104

Web Source: Membrane Transport

Biochemistry of Membrane Transprot

http://www.ohsu.edu/biochem/lutsenko/images/transport2.ppt

Essential Biochemistry: Membrane Transport

http://www.wiley.com/college/pratt/0471393878/student/animations/membrane_transport/index.html

Gap junctions
http://www.sdsc.edu/journals/jmb/1998/perkins/

Ion channel
http://scv.bu.edu/SCV/vizgal/ion/ion.html

Membrane transport mechanisms
http://esg-www.mit.edu:8001/esgbio/cb/membranes/transport.html

Membrane transport graphics
http://www.wellesley.edu/Chemistry/chem227/lipids/transport.htm

Membrane Transport: Carriers, Pumps, & Channels

http://rpi.edu/dept/bcbp/molbiochem/MBWeb/mb1/part2/carriers.htm

Structure and Function

http://dwb.unl.edu/Teacher/NSF/C10/C10Links/mills.edu/RESEARCH/FUTURES/JOHNB/structurefunction/725.html

Web Source: pH and Ionic Equilibria

Acids and bases problem set
http://www.biology.arizona.edu/biochemistry/problem_sets/ph/ph.htm

Acid/Base Equilibrium

http://www.cofc.edu/genchemlab/acidbase.htm

General Chemistry/Acids in equilibrium (WikiBooks)

http://en.wikibooks.org/wiki/General_Chemistry/Acids_in_equilibrium

Molecular dynamics simulation of liquid water
http://chem-www.mps.ohio-state.edu/~lars/liquid.html

pH Scale and Acids/Bases

http://www.elmhurst.edu/~chm/vchembook/184ph.html

pH and Equilibrium

http://preparatorychemistry.com/Bishop_pH_Equilibrium.htm

pH and acid/base equilibrium

http://www.chembuddy.com/?left=pH-calculation&right=toc

Solving Equilibrium Problems

http://chemed.chem.purdue.edu/genchem/topicreview/bp/ch17/bases.php

Web Source: Recombinant DNA

A bacterial genetics and recombinant DNA quiz
http://biog-101-104.bio.cornell.edu/BioG101_104/tutorials/recomb_DNA.html

About Recombinant DNA

http://library.thinkquest.org/04apr/00217/en/products/recdna/about.html

Biological Safety: Recombinant DNA Research

http://www.drs.illinois.edu/bss/factsheets/rdna.aspx?tbID=fs

Cloning: Dolly Company Used Woman’s DNA
http://news.bbc.co.uk/hi/english/uk/scotland/newsid_816000/816791.stm

Goat/Sheep Hybrid
http://news.bbc.co.uk/hi/english/sci/tech/newsid_813000/813466.stm

Historical events in recombinant DNA
http://www.ndsu.nodak.edu/instruct/mcclean/plsc431/debate/debate3.htm

NIH Guidelines for Recombinant DNA Work (132 pages, in PDF format)

http://oba.od.nih.gov/oba/index.html

Pig Clone to Human Transplant
http://news.bbc.co.uk/hi/english/sci/tech/newsid_677000/677637.stm

Protocols for Recombinant DNA
http://www.genome.ou.edu/protocol_book/protocol_index.html

Recombinant DNA technology problem set
http://www.biology.arizona.edu/molecular_bio/problem_sets/Recombinant_DNA_Technology/recombinant_dna.html

rDNA (Animation)

http://www.present.udel.edu/biotech/rDNA.html

Recombinant DNA and Gene Cloning

http://users.rcn.com/jkimball.ma.ultranet/BiologyPages/R/RecombinantDNA.html

Recombinant DNA (Prof Peter Chantler)

http://www.rvc.ac.uk/review/DNA_1/Index.cfm

Recombinant DNA Tutorials (BioG 1103-1104)

http://biog-101-104.bio.cornell.edu/BIOG101_104/tutorials/recomb_DNA.html

Recombinant DNA (Video)

http://www.youtube.com/watch?v=YdjvUv-1vCI

Recombinant Technology (Flash)

http://www.bioteach.ubc.ca/TeachingResources/Applications/GMOpkgJKloseGLampard2.swf

Recombinant DNA-a short course

http://bcs.whfreeman.com/watson/default.asp?s=&n=&i=&v=&o=&ns=0&uid=0&rau=0

Recombinant DNA: Example Using Insulin

http://www.iptv.org/exploremore/ge/what/insulin.cfm

Recombinant DNA Technology Problem Set

http://www.biology.arizona.edu/molecular_bio/problem_sets/recombinant_dna_technology/02Q.html

Recombinant DNA Technology in the Synthesis of Human Insulin

http://www.littletree.com.au/dna.htm

Search Results: "recombinant DNA" Slides

http://www.bioedonline.org/slides/slide01.cfm?q=%22recombinant+DNA%22

The Basics of Recombinant DNA

http://www.rpi.edu/dept/chem-eng/Biotech-Environ/Projects00/rdna/rdna.html

Techniques: Recombinant DNA

http://library.thinkquest.org/24355/data/light/details/techniques/recombinantdna.html

The human genome and eugenics
http://www.pbs.org/wnet/innovation/show1/html/2sb-eugenics.html

Video results for Recombinant DNA

http://www.google.com/search?client=firefox-a&rls=org.mozilla%3Aen-US%3Aofficial&channel=s&hl=en&q=Recombinant+DNA&btnG=Google+Search