Web Source: DNA Replication, Mutation and Repair

DNA Replication, Mutation and Repair

http://www.web-books.com/MoBio/Free/Chap7.htm

Chromosomes, Chromatin, DNA Replication and Repair

http://www.dartmouth.edu/~cbbc/courses/bio4/bio4-1997/03-DNA&Chromosomes.html

Chromatin Challenges during DNA Replication and Repair .

http://linkinghub.elsevier.com/retrieve/pii/S0092867407001298

DNA Replication and Repair

bioinformatics.rit.edu/molbiol/Mol_Biol_week_4.ppt

DNA Replication, Repair, and Recombination

http://www.garlandscience.com/textbooks/081533480X/pdf/ch06.pdf

DNA Replication and Repair

http://www.csupomona.edu/~nebuckley/Courses/Bio450/Lectures/Bio%20450%20Lecture%208%20Replication%20and%20Repair.htm

DNA Replication and repair

https://eapbiofield.wikispaces.com/DNA+Replication+and+repair

DNA, DNA REPLICATION, DNA REPAIR

http://www.usd.edu/med/som/somdept/biochem/courses/bioc520/b520_413.htm

DNA Replication, Repair, and Recombination

http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=mcb.chapter.3140

DNA replication
http://esg-www.mit.edu:8001/esgbio/dogma/repl.html

DNA repair genes
http://www.cancergenetics.org/dnafix.htm

DNA replication and repair

http://www.nature.com/nature/supplements/insights/replicationandrepair/index.html

Lecture 18: DNA Replication & Repair

http://www.bio.cmu.edu/courses/03231/LecF04/Lec18/lec18.html

Site listing for DNA replication
http://dir.niehs.nih.gov/dirlmg/repl.html

Web Source: Enzymology (2)

Advances in Enzymology

http://www3.interscience.wiley.com/bookseries/113470100/home?CRETRY=1&SRETRY=0

Computational Enzymology

http://www-fp.mcs.anl.gov/ccst/research/reports_pre1998/comp_bio/enzymology/enzymology96.html

ENZYME KINETICS "Big Three Approaches"

http://bmbiris.bmb.uga.edu/wampler/8010/lectures/kinetics/index.htm

From Protein Science to Enzymology

http://bmbiris.bmb.uga.edu/wampler/8010/lectures/enzyme/index.htm

Membrane Enzymology

http://www.rug.nl/gbb/research/researchgroups/enzymology/index

Methods in Enzymology

http://www.sciencedirect.com/science/bookseries/00766879

Ribozyme Enzymology

http://academic.brooklyn.cuny.edu/chem/zhuang/QD/toppage1.htm

Web Source: Molecular Graphics

3D Molecular Graphics

http://www.cs.umd.edu/gvil/visproteomics.shtml

A comprehensive database of molecular structures
http://www.biomednet.com/db/msd

A biocomputing hypertext coursebook
http://merlin.mbcr.bcm.tmc.edu:8001/bcd/Curric/welcome.html

A molecular graphics art show
http://www.scripps.edu/pub/goodsell/mgs_art/mgs_art.html

A more recent molecular graphics art show
http://www.scripps.edu/pub/goodsell/mgs_art/mgs_art2/index.html

A collection of biomolecular research tools
http://www.public.iastate.edu/~pedro/research_tools.html

A molecular library
http://c4.cabrillo.cc.ca.us/projects/library/

Animated and still biochemistry graphics
http://www-medlib.med.utah.edu/NetBiochem/graphlis.htm

An art gallery of molecular models
http://www2.kenyon.edu/depts/biology/eward/gallery/galleryintro.html

Biomolecular structure and modeling in the United Kingdom
http://www.biochem.ucl.ac.uk/bsm/

Biocomputing and molecular modeling
http://www-bio.unizh.ch/

Biomolecular Visualization Center
http://amanda.uams.edu/index_text.html

Computational molecular biology at NIH
http://webasaurus.dcrt.nih.gov/molbio/

CCP$ Molecular Graphics

http://www.ysbl.york.ac.uk/~ccp4mg/

Entrez: Data sets for biochemistry and molecular biology.
http://www3.ncbi.nlm.nih.gov/Entrez/index.html

Ferritin Molecular-Graphics Tutorial

http://www.chemistry.wustl.edu/~edudev/LabTutorials/Ferritin/FerritinTutorial.html

Home page for a molecular graphics laboratory
http://www.scripps.edu/pub/olson-web/

Hierarchical classification of proteins
http://www.protomap.cs.huji.ac.il/

Image library of biological macromolecules
http://www.imb-jena.de/IMAGE.html

Journal of Molecular Graphics and Modelling

http://www.sciencedirect.com/science/journal/10933263

Molecular Graphics

http://www.hhmi.swmed.edu/external/crystallography/gr1.html

Molecular Graphics (Indiana University)

http://www.iumsc.indiana.edu/graphics/index.html

Molecular Graphics Software Links

http://www.rcsb.org/pdb/static.do?p=software/software_links/molecular_graphics.html

Molecular Graphics

http://mgl.scripps.edu/people/goodsell/mgs_art/index.html

Molecular Surfaces: Molecular Graphics

http://www.netsci.org/Science/Compchem/feature14d.html

Model-building tools for molecular graphics

http://scripts.iucr.org/cgi-bin/paper?S0907444904019158

Molecular Graphics

http://www.uwm.edu/Dept/Chemistry/molxtl/

MolGraph: Molecular modeling program.
http://chemb16.leidenuniv.nl/~armand/

Molecular biology database compendium
http://www.tulane.edu/~dmsander/biotechniquessites.html

Molecular models for biochemistry
http://info.bio.cmu.edu/Courses/BiochemMols/BCMolecules.html

Molecular Models Online
http://www.webmolecules.com/index.shtml

Molecular visualization tools and sites
http://www.indiana.edu:80/~cheminfo/mvts.html

Molecular Visualization Freeware

http://www.umass.edu/microbio/rasmol/

Molecular Graphics with POVRay and Swiss PDB Viewer

http://wwwchem.leidenuniv.nl/metprot/armand/

Molecular Graphics and Modelling Society (MGMS)

http://www.mgms.org/

Molecular Graphics Applications in the CSB Core Laboratory, Yale University

http://www.csb.yale.edu/userguides/graphics/csb_hm_graph.html

Molecular Graphics and Computation Facility

http://glab.cchem.berkeley.edu/

NIH Center for Molecular Modeling
http://cmm.info.nih.gov/modeling/

Online macromolecular museum
http://www.clunet.edu/BioDev/omm/gallery.htm

Online resources for molecular biology
http://webasaurus.dcrt.nih.gov/molbio/servers.html

PovChem program for molecular graphics
http://grserv.med.jhmi.edu/~paul/Manual.html

PyMOL molecular visualization system

http://pymol.sourceforge.net/

Rendering techniques for molecular models
http://scsg9.unige.ch/fln/eng/toc.html

RCSB: The home site for all PDB files.
http://www.rcsb.org/pdb/

Software for biological data representation
http://www.sdsc.edu/pb/Software.html

Some biochemistry molecular models
http://moby.ucdavis.edu/HRM/Biochemistry/molecules.htm

Swiss PDB viewer
http://expasy.expasy.ch/spdbv/

The Molecular Graphics Laboratory （The Olson Lab）

http://mgl.scripps.edu/

The MolMol program for molecular visualization
http://www.mol.biol.ethz.ch/wuthrich/software/molmol/

The Journal of Molecular Modeling
http://link.springer.de/link/service/journals/00894/index.htm

The Protein Data Bank through Microsoft Windows
http://www.sdsc.edu/pb/wpdb/wpdb.htm

The "Ribbons" software home page
http://www.cmc.uab.edu/ribbons/

The Molray molecular graphics web interface homepage

http://xray.bmc.uu.se/markh/notes/howto/molray.html

Using NMR for biomolecular structures
http://www.ocms.ox.ac.uk/idc/structures/

Virtual reality and biochemistry
http://www.tc.cornell.edu:80/~richard/

VRML file creator for chemical structures
http://www2.ccc.uni-erlangen.de/services/vrmlcreator/

Visual Molecular Dynamics

http://www.ks.uiuc.edu/Research/vmd/

Molecular Graphics Applications in the CSB Core Laboratory, Yale University

http://www.csb.yale.edu/userguides/graphics/csb_hm_graph.html

Bobscript
Cambridge Structural Database
Chimera
Cn3d
Coot
DialX
DRAWNA
Explorer
Fragment
Ghostscript and Ghostview
Grasp
HOLE
IRIS Explorer
ISIS/DRAW
LIGPLOT
MAIN
Manip
MGLTools
MidasPlus
Molscript
Molecular Surface Package
Molecular Surface Viewer (MSV)
MOLMOL
Moloc
NAMOT
NAOMI
Nucplot
O
Ortep-III
PLUTON
Povscript
PyMOL
Quanta
RasMol
Raster-3D
Rayscript
Rayshade
Ribbons
SPOCK
TurboFrodo
SETOR
Sims
SURFNET
Swiss-PDBViewer
VMD
Westhof Programs
WHAT IF
Xtalview
XZAM

Web source: Photosynthesis

An Introduction to Photosynthesis and Its Applications

http://bioenergy.asu.edu/photosyn/education/photointro.html

Illuminating Photosynthesis

http://www.pbs.org/wgbh/nova/methuselah/photosynthesis.html

Photosynthesis components in 3D
http://www.nyu.edu/pages/mathmol/library/photo/

Photosynthesis problem set
http://www.biology.arizona.edu/biochemistry/problem_sets/photosynthesis_1/photosynthesis_1.html

Photosynthesis problem set 2
http://www.biology.arizona.edu/biochemistry/problem_sets/photosynthesis_2/photosynthesis_2.html

Photosynthesis (Wikipedia)

http://en.wikipedia.org/wiki/Photosynthesis

Photosynthesis

http://www.emc.maricopa.edu/faculty/farabee/BIOBK/BioBookPS.html

Photosynthesis

http://biology.clc.uc.edu/Courses/bio104/photosyn.htm

Photosynthesis (animation)

http://www.johnkyrk.com/photosynthesis.html

Go to Illuminating Photosynthesis Flash required

Photosynthesis

http://library.thinkquest.org/3715/photo3.html

Photosynthesis-Light Reactions (Flash)

http://www.fw.vt.edu/dendro/forestbiology/photosynthesis.swf

Photosynthesis

http://www.phschool.com/science/biology_place/biocoach/photosynth/intro.html

Photosynthesis (Youtube Video)

http://www.youtube.com/watch?v=hj_WKgnL6MI

Web source: The Tricarboxylic Acid Cycle

Citric acid cycle

http://www.chemistrydaily.com/chemistry/Citric_Acid_Cycle

Citric Acid Cycle (from About.com)

http://chemistry.about.com/od/biochemistry/ss/citricacidcycle.htm

Krebs cycle, citric acid cycle or tricarboxylic acid cycle

http://www.biotopics.co.uk/a2/TCAcycle.html

Overview of the TCA cycle
http://www.accessexcellence.org/AB/GG/citric_Cycle_a.html

References, tricarboxylic acid cycle

http://www.hort.purdue.edu/rhodcv/hort640c/referen/tca.htm

TCA cycle inputs, reactions, and control
http://www.chem.wsu.edu/Chem102/102-CitrAcCycOxPhos.html

The Citric Acid Cycle

http://people.unt.edu/~hds0006/tca/

Tricarboxylic Acid Cycle (Quizzes)

http://faculty.une.edu/com/courses/bionut/distbio/obj-512/Chap20.htm

The TCA cycle in 3D
http://www.gwu.edu/~mpb/citric3d.htm

Web source: Carbohydrate, Amino acid, and Fatty Acid Metabolism

Carbohydrate Metabolism

Carbohydrate Metabolism Regulation Problem Set

http://www.biology.arizona.edu/biochemistry/problem_sets/carbomet/carbomet.html

Carbohydrate Metabolism (chapter in PDF)

http://www.textbooksonline.tn.nic.in/Books/12/BioChem-EM/chepter%203.pdf

Carbohydrate metabolism

http://www.medbio.info/Horn/Time%201-2/carbohydrate_metabolism.htm

Carbohydrate Metabolism (animation)

http://ull.chemistry.uakron.edu/genobc/Chapter_23/

Disorders of Carbohydrate Metabolism

http://emedicine.medscape.com/article/1183033-overview

INTRODUCTORY METABOLISM MODULE: CARBOHYDRATE METABOLISM

http://www.unisanet.unisa.edu.au/08366/h&p2carb.htm

Overview of Carbohydrate Metabolism

http://www.elmhurst.edu/~chm/vchembook/600glycolysis.html

UniProt Knowledgebase keyword: Carbohydrate metabolism

http://expasy.org/cgi-bin/get-entries?KW=Carbohydrate+metabolism

Amino Acid Metabolism

Amino acid metabolism
http://web.indstate.edu/thcme/mwking/amino-acid-metabolism.html

Amino acids and functions
http://microscopy.fsu.edu/aminoacids/

Amino Acid Metabolism

http://www.bmb.leeds.ac.uk/illingworth/metabol/amino.htm

Amino acid metabolism (from “what is life”)

http://www.whatislife.com/reader2/Metabolism/pathway/aminoacid.html

Amino Acid Metabolism (Nitrogen Metabolism)

http://seqcore.brcf.med.umich.edu/mcb500/aasyl/aametab.html

Amino Acid Metabolism (Merck Manuals)

http://www.merck.com/mmhe/sec23/ch282/ch282c.html

Amino Acid Catabolism: Carbon Skeletons

http://rpi.edu/dept/bcbp/molbiochem/MBWeb/mb2/part1/aacarbon.htm

The Urea Cycle
http://users.rcn.com/jkimball.ma.ultranet/BiologyPages/U/UreaCycle.html

Urea Cycle

http://www.elmhurst.edu/~chm/vchembook/633ureacycle.html

Urea Cycle

http://ull.chemistry.uakron.edu/Pathways/urea_cycle/index.html

Fatty Acid Metabolism

Activation and transport of fatty acids
http://www.gwu.edu/~mpb/fa-activation3d.htm

Beta oxidation of fatty acids
http://www.gwu.edu/~mpb/betaox-odd3d.htm

Fatty acids tutorial
http://www-medlib.med.utah.edu/NetBiochem/FattyAcids/index.html

Fatty Acid Synthesis and Oxidation

http://library.med.utah.edu/NetBiochem/FattyAcids/outline.html

Fatty Acid Metabolism (animation)

http://www.wiley.com/legacy/college/boyer/0470003790/animations/fatty_acid_metabolism/fatty_acid_metabolism.htm

Fatty Acid Metabolism

http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=stryer.chapter.3038

Fatty acid metabolism - Reference pathway

http://www.genome.ad.jp/kegg/pathway/map/map00071.html

Fatty Acid Oxidation Assay

http://www.natureprotocols.com/2006/12/15/fatty_acid_oxidation_assay.php

Kegg Pathway: Fatty acid metabolism

http://apropos.mcw.edu/kegg_pathways/show/11

Lipid Catabolism: Fatty Acids & Triacylglycerols

http://www.rpi.edu/dept/bcbp/molbiochem/MBWeb/mb2/part1/fatcatab.htm

Polyunsaturated fatty acid oxidation
http://www.gwu.edu/~mpb/polyunsaturated3d.htm